rs4224820 SNP Detail

Summary

• ID
  rs4224820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTCCAT GGTGCTGTTA
  ACAGCCCCAA GGCTTAGCAG AAGTCCTGTC TGCACCCCCA CAACTACTTT ACTCCTCATA
  CATACAGGGC CCTTGGATCC AAACTAGAGG AGGTTGAGGG CTGGCCAAAT AACCAGATAC
  AACTGAGACG ATCCCTAAAT TGGGAGGCAA GAAAAACCAG AAAGCTAAGG CTCAAAGGCC
  Y
  TAGAGAAACA CAAAACACCA GAAAACACTC AACACTTTTT TTTTATCTTA GGTGCTCCGA
  ACTGTCAAGG TTAGAGCAGG AAAAGGGAAC CCTCCTAACC CCAAATGAGA GGCACAGTTC
  AGAGGACAGC GACAGCGCCC AGCCTTAGGA AGGACTGAGC AGCCACAGCC ACCCTGTGCT
  CTTACGGGGG AAACTCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6387800	AI173504_371	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4224820					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387800	AI173504_371	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857658 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	1227 bp distal
Gm68742	predicted gene, 68742	736 bp upstream
Rr601575	regulatory region 601575	1068 bp distal
Rr601576	regulatory region 601576	487 bp distal
Rr601577	regulatory region 601577	647 bp distal
Rr601578	regulatory region 601578	499 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1614 bp upstream
Tssr43875	transcription start site region 43875	1647 bp upstream
Tssr43876	transcription start site region 43876	1577 bp upstream
Tssr43877	transcription start site region 43877	736 bp upstream