rs4224821 SNP Detail

Summary

• ID
  rs4224821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACGATCCCT AAATTGGGAG GCAAGAAAAA CCAGAAAGCT
  AAGGCTCAAA GGCCTTAGAG AAACACAAAA CACCAGAAAA CACTCAACAC TTTTTTTTTA
  Y
  CTTAGGTGCT CCGAACTGTC AAGGTTAGAG CAGGAAAAGG GAACCCTCCT AACCCCAAAT
  GAGAGGCACA GTTCAGAGGA CAGCGACAGC GCCCAGCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	SPRET/EiJ
ss6387801	AI173504_417	TWGNF	TWGNF-Mouse	f	SNP	C	C	C		C	T	C	C						C
ss37762640	NES09166382	PERLEGEN	MM_PANEL2	f	SNP				C			C		T		C	C
ss45633115	mCV24804673	ABI	CRAMUS_MOUSE	f	SNP		C				T		C
ss321345460	CHEV_4_133686308	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	SPRET/EiJ
rs4224821					SNP	C	C	C	C	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387801	AI173504_417	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss37762640	NES09166382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857704 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	1273 bp distal
Gm68742	predicted gene, 68742	782 bp upstream
Rr601575	regulatory region 601575	1114 bp distal
Rr601576	regulatory region 601576	533 bp distal
Rr601577	regulatory region 601577	693 bp distal
Rr601578	regulatory region 601578	545 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1660 bp upstream
Tssr43875	transcription start site region 43875	1693 bp upstream
Tssr43876	transcription start site region 43876	1623 bp upstream
Tssr43877	transcription start site region 43877	782 bp upstream