rs4225116 SNP Detail

Summary

• ID
  rs4225116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30324667 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCCA TCAGAGTGCC TTCTGCCCTG
  R
  CCCGCTCTTC CTCCTGGTGA AGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6388102	C77020_8	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4225116					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6388102	C77020_8	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30324667 () rs orientation: reverse

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Garem2	GRB2 associated regulator of MAPK1 subtype 2	1289 bp downstream
Hadha	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	within coordinates
Rr112564	regulatory region 112564	1067 bp distal
Rr122057	regulatory region 122057	1316 bp proximal
Rr128721	regulatory region 128721	334 bp proximal
Tssr50477	transcription start site region 50477	125 bp downstream
Tssr50478	transcription start site region 50478	556 bp downstream
Tssr50479	transcription start site region 50479	1102 bp downstream