rs4225119 SNP Detail

Summary

• ID
  rs4225119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30324340 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCTG TGCAGTGGAG CATAGACGGG
  Y
  TGGGAGATGT CGGGCAGCTG CTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6388105	C77020_335	TWGNF	TWGNF-Mouse	f	SNP	C		C		C		C	C	T	C							C
ss61133386	NES16636988	PERLEGEN	MM_PANEL2	r	SNP		G	G	G	G	G	G		A	G	G	G	G	G	G	A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4225119					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6388105	C77020_335	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss61133386	NES16636988	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30324340 () rs orientation: reverse

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Garem2	GRB2 associated regulator of MAPK1 subtype 2	962 bp downstream
Hadha	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	81 bp downstream
Rr112564	regulatory region 112564	740 bp distal
Rr122057	regulatory region 122057	1643 bp proximal
Rr128721	regulatory region 128721	661 bp proximal
Tssr50477	transcription start site region 50477	452 bp downstream
Tssr50478	transcription start site region 50478	883 bp downstream
Tssr50479	transcription start site region 50479	1429 bp downstream