rs4225893 SNP Detail

Summary

• ID
  rs4225893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49317006 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTATT ACTCTGTCCT AGGCAGCAGT
  K
  TAAGAGGTGC GCTGCGATGG ATGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
ss6388885	AL022711_416	TWGNF	TWGNF-Mouse	f	SNP	T	G	G	G	T	T	G
ss133169994	ENSMUSSNP1133124	ENSEMBL	ENSEMBL_Sanger	r	SNP		C					C
ss321795987	CHEV_6_49290071	CHEVERUD	SCREENING_POP	r	SNP								C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
rs4225893					SNP	T	G	G	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6388885	AL022711_416	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49317006 () rs orientation: reverse

Symbol	Name	Function Class
Ccdc126	coiled-coil domain containing 126	within coordinates
Rr629883	regulatory region 629883	1015 bp distal
Tssr60889	transcription start site region 60889	1377 bp upstream