rs4226000 SNP Detail

Summary

• ID
  rs4226000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72337227 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGAT AAATTAACTT GCACCACCCC
  M
  CTCCGGAAAT CTCTAGTTAA CCTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MSM/Ms
ss6388992	C77350_300	TWGNF	TWGNF-Mouse	f	SNP	A		A	A	A	A	C	A
ss133283903	ENSMUSSNP3389269	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T					T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MSM/Ms
rs4226000					SNP	A	A	A	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6388992	C77350_300	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72337227 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	1780 bp proximal
Rnf181	ring finger protein 181	within coordinates
Tmem150a	transmembrane protein 150A	482 bp downstream
Tssr61439	transcription start site region 61439	792 bp downstream
Tssr61440	transcription start site region 61440	1181 bp downstream