rs4226016 SNP Detail

Summary

• ID
  rs4226016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81935039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                         TCAGAGAAG AGCGTCCCCT GGAGCCCCTC CCAGCCCAGA
  R
  TACAGGTGTT TGAGTGCGCC GTGTGGGAGT GCCCAGAGTC AAGATGACCG TGTCACAGCC
  GATGCCGCCT TTGCTGGGTG CCCACTTGGG GTGTGGCCAG GCCTCCTGAT GCTTCGTAGC
  TGAGGGAAGT AATGCACAGC AGCAGCCGAG CTCAGTGTGC TGCTCTTTTA CTCTCTCAAT
  CCGGAAGGAA ATGAAGCAAT CTGACACACA GAAGCATGCC TGAATCAAAA CCATCTTCAG
  CAAACTCCAA TGTTTGCAGA TCAGCTAATG AGGAAGCTCT ATCTCTGGAT GGTTTCTTTT
  ATCTTATTCT TTGGTGGGGA CTCGGTCTCA TTCTGAAGTG TAAGGAATTA CTTATTAAAT
  AGCTAACACA TTTTTATACA AACTGTCCTT TCAAAATCTG TACTGACTTA CTGTGTGAAA
  TCA                                                              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6389008	AW146020_40	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4226016					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389008	AW146020_40	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81935039 () rs orientation: forward

Symbol	Name	Function Class
Gcfc2	GC-rich sequence DNA binding factor 2	within coordinates
Mrpl19	mitochondrial ribosomal protein L19	within coordinates
Rr632566	regulatory region 632566	1452 bp distal