rs4226409 SNP Detail

Summary

• ID
  rs4226409
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16405219 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                 TATGTTT TGCTGTAGAT
  GTATGGTTTG GGACAGTTTT CATCTGTATA TTTTTTTGAT GCTCAGATGT AAAAATCCAT
  GGACATAAAG GCCCCATGTA TTGAGTTTCT TGTCCTGAGT CTGGCATTTT TTCCCGTGCG
  W
  CCTTGCACAA GATCCTGTTT CGTCTGAACA ATTTCCAGTG TGCTGAAAAG CACACATAAG
  ATTTTAGCCA TTTGACAACC ACAGCTGAAT GGCATGAAGC TCAATCATAC TGTTGTGTGA
  CCGTCACCAT GGTCCATTCC TAAGCCCGAT TTAAACCTTT CCATTCACAA CAGCAACTAA
  CATTCTGCCT CTTTCCCTAT ACATGGAACA AAACCAATTG TTTTGTTTAT GGTTACTATC
  AGCACAGA                                                         
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6389402	AA407838_138	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4226409					SNP	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389402	AA407838_138	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16405219 () rs orientation: reverse

Symbol	Name	Function Class
Ceacam15	CEA cell adhesion molecule 15	37 bp downstream