GGCGGCGTAT GGCGGACGCG GTGCTATTCG AGTTTCTGCA CACCGAGATG GTGGCGGAGC TGTGGGCCCC GGACCCGGAC CCAGGCTCGG GGGTGAGCGG CACGCCGTGG CCTCGGGGTG GAGAAGTGGG GTGTGATCGA GCCTTATGGC AGGTCATTGC TGAGGCGGAG CGAGATGACT TGGGTCAAGG CGCTCAGTTC Y AGGCCTCGTC CTGGGGCGCC GTTGATAATT AGGGTAATTG GCTGTTATTG GGCTCAGATG AGGGCTCGCC TCACCACCCA CTTAGTATGC AACTCAACAT CTTTAATCTT CCTATCCTTC CGTTTCCTCC TTAGAAAATG CACCCTCAAC CATACCCGGT CTCATCTGTC CCCTCTGCCT GTGTGCTGGA TAAAGTGCGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
129X1/SvJ |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss6389433 | AI480686_60 | TWGNF | TWGNF-Mouse | f | SNP | C | T | T | C | T | T | T | C | |
ss46031227 | mCV25050725 | ABI | CRAMUS_MOUSE | f | SNP | C | T | T | T | |||||
ss148477884 | ENSMUSSNP3708769 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | T | ||||||
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | 129/Sv |
129X1/SvJ |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
||||
rs4226440 | SNP | C | C | T | T | C | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss6389433 | AI480686_60 | TWGNF | TWGNF-Mouse-2 | f | SNP | C/T |
Location: Chr7:19242866 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bloc1s3 | biogenesis of lysosomal organelles complex-1, subunit 3 | 571 bp upstream | ||||||
Cpgi18495 | CpG island 18495 | within coordinates | ||||||
Gm74038 | predicted gene, 74038 | 805 bp downstream | ||||||
Rr167175 | regulatory region 167175 | within coordinates | ||||||
Rr400150 | regulatory region 400150 | 118 bp downstream | ||||||
Trappc6a | trafficking protein particle complex 6A | within coordinates | ||||||
Tssr64863 | transcription start site region 64863 | 1581 bp downstream | ||||||
Tssr64864 | transcription start site region 64864 | 200 bp downstream | ||||||
Tssr64865 | transcription start site region 64865 | 187 bp downstream | ||||||
Tssr64866 | transcription start site region 64866 | 170 bp downstream | ||||||
Tssr70925 | transcription start site region 70925 | 637 bp upstream | ||||||
Tssr70926 | transcription start site region 70926 | 564 bp upstream | ||||||
Tssr70927 | transcription start site region 70927 | 552 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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