rs4226442 SNP Detail

Summary

• ID
  rs4226442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19243013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTCAT TGCTGAGGCG
  GAGCGAGATG ACTTGGGTCA AGGCGCTCAG TTCTAGGCCT CGTCCTGGGG CGCCGTTGAT
  AATTAGGGTA ATTGGCTGTT ATTGGGCTCA GATGAGGGCT CGCCTCACCA CCCACTTAGT
  ATGCAACTCA ACATCTTTAA TCTTCCTATC CTTCCGTTTC CTCCTTAGAA AATGCACCCT
  Y
  AACCATACCC GGTCTCATCT GTCCCCTCTG CCTGTGTGCT GGATAAAGTG CGTGCTGATC
  GCGCTACACC CCAGCACACA GTGAGTTTTT TAGTATGGAT TTGCCCCTGT AATGAGTAAA
  GACCCCACCC GGTAATGTGG AAGGTGGCGC TGGGATCACT GAAATATTGT AATCAATAAT
  AGTTACCACC ACTTATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6389435	AI480686_207	TWGNF	TWGNF-Mouse	f	SNP	C		C		C		C	C	T	C							C
ss48163073	NES11826188	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C		T	C	C	C	C	C	C	C		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4226442					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389435	AI480686_207	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss48163073	NES11826188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19243013 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	718 bp upstream
Cpgi18495	CpG island 18495	within coordinates
Gm74038	predicted gene, 74038	952 bp downstream
Rr167175	regulatory region 167175	within coordinates
Rr400150	regulatory region 400150	265 bp downstream
Trappc6a	trafficking protein particle complex 6A	within coordinates
Tssr64863	transcription start site region 64863	1728 bp downstream
Tssr64864	transcription start site region 64864	347 bp downstream
Tssr64865	transcription start site region 64865	334 bp downstream
Tssr64866	transcription start site region 64866	317 bp downstream
Tssr70925	transcription start site region 70925	784 bp upstream
Tssr70926	transcription start site region 70926	711 bp upstream
Tssr70927	transcription start site region 70927	699 bp upstream