rs4226560 SNP Detail

Summary

• ID
  rs4226560
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445961 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         TCCACGTGC GCAGAATAGG CGCAGTCCTA GCGTGACTAG
  GAGTGGGGAC AAATGGGATG GAGTCCAGAG AAGAAATCCT ATTGGGTGAA ATATGAAGGG
  W
  TGCAGCAGCT ATTTAGGGAA AGATATTTCT TGGCGGTGAT CCTGAGGGTT GGGCTATTCC
  AGAGAATGGT GATTAAAATG GTGTAGCATG GGCCAGGAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss6389554	AI324041_49	TWGNF	TWGNF-Mouse	f	SNP	T	A			T			T	T	A	A									A
ss24761905	Prss19_JC9447_12	ROCHEBIO	RPAMM	r	SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	T	T	A	T
ss149084103	ENSMUSSNP4372299	ENSEMBL	ENSEMBL_Sanger	r	SNP		A									T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs4226560					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389554	AI324041_49	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445961 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	68 bp proximal
Cpgi18946	CpG island 18946	797 bp proximal
Klk8	kallikrein related-peptidase 8	1040 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	937 bp proximal
Rr646023	regulatory region 646023	1051 bp proximal
Rr646024	regulatory region 646024	1157 bp proximal
Tssr66051	transcription start site region 66051	1007 bp upstream
Tssr66052	transcription start site region 66052	1030 bp upstream
Tssr66053	transcription start site region 66053	1486 bp upstream
Tssr72173	transcription start site region 72173	970 bp downstream