rs4226561 SNP Detail

Summary

• ID
  rs4226561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43445852 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGCA TGGGCCAGGA GCAAAGGAGG
  Y
  GTGTCTCAGT TGGTTTTTTT TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6389555	AI324041_158	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4226561					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389555	AI324041_158	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43445852 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	177 bp proximal
Cpgi18946	CpG island 18946	906 bp proximal
Klk8	kallikrein related-peptidase 8	1149 bp upstream
Klk9	kallikrein related-peptidase 9	within coordinates
Rr646021	regulatory region 646021	within coordinates
Rr646022	regulatory region 646022	1046 bp proximal
Rr646023	regulatory region 646023	1160 bp proximal
Rr646024	regulatory region 646024	1266 bp proximal
Tssr66051	transcription start site region 66051	1116 bp upstream
Tssr66052	transcription start site region 66052	1139 bp upstream
Tssr66053	transcription start site region 66053	1595 bp upstream
Tssr72173	transcription start site region 72173	1079 bp downstream