rs4227582 SNP Detail

Summary

• ID
  rs4227582
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32666560 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTATTCTGAG TCTTCCATGT
  TTCGGGTAGC GGTTTAACCA AAACCCAGGT TAATCCTGCT CCTTGGATTT CGTTTCCAAG
  ACTTGAACTG TGCTATGATG CCGACGATTC CATAGAAGAG CTGCAGAATA CATTCAGTGC
  AGAGACTTAA CGCCCCGTAA CTAACACTAA GTCCAAAGCC TGACAGTGAA TCAAAGGAAA
  W
  CAGTTTTTAC AAACCGCAGG TGGAAGTCAC ACGCACAGTC CCCCTGTCCC CAGATCAGCA
  TTCGTTTCCT TTAGCTGTAA GAGTTTGGGG TCTCTGATCT CAGTACAGAA CTGGGATTTT
  TCCAATGGGG TCTATATAAA CAGTTGTCTT TCACTGTGAC AAGAGTCCTC AGCCAGCAAA
  TAACAACAAA CTCACAATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6390586	AI448617_23	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4227582					SNP	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6390586	AI448617_23	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32666560 () rs orientation: reverse

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr676252	regulatory region 676252	804 bp proximal
Tssr84301	transcription start site region 84301	803 bp downstream
Tssr84302	transcription start site region 84302	614 bp downstream
Tssr84303	transcription start site region 84303	498 bp downstream