rs4227583 SNP Detail

Summary

• ID
  rs4227583
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32666496 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         ACTAAGTCC AAAGCCTGAC AGTGAATCAA AGGAAAACAG
  TTTTTACAAA CCGCAGGTGG AAGTCACACG CACAGTCCCC CTGTCCCCAG ATCAGCATTC
  S
  TTTCCTTTAG CTGTAAGAGT TTGGGGTCTC TGATCTCAGT ACAGAACTGG GATTTTTCCA
  ATGGGGTCTA TATAAACAGT TGTCTTTCAC TGTGACAAGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6390587	AI448617_87	TWGNF	TWGNF-Mouse	f	SNP	G		G	G	G	G	G	C	G
ss46377788	mCV23151935	ABI	CRAMUS_MOUSE	r	SNP			C					G
ss136251164	ENSMUSSNP1484434	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C					G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4227583					SNP	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6390587	AI448617_87	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32666496 () rs orientation: reverse

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr676252	regulatory region 676252	868 bp proximal
Tssr84301	transcription start site region 84301	739 bp downstream
Tssr84302	transcription start site region 84302	550 bp downstream
Tssr84303	transcription start site region 84303	434 bp downstream