rs4227587 SNP Detail

Summary

• ID
  rs4227587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32666217 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAAAG TCCATCATTG TTTCAAAAAG
  Y
  AGAAAGGTTA ATAATTCTTG AGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6390591	AI448617_366	TWGNF	TWGNF-Mouse	f	SNP	T			T		T		T	T	T	C							T
ss46298790	mCV23151939	ABI	CRAMUS_MOUSE	r	SNP			A	A					A		G
ss50669011	NES14018895	PERLEGEN	MM_PANEL2	r	SNP		A		A	A	A	G	A		A	G	A	A	A	A	A	G		A
ss136251155	ENSMUSSNP3401825	ENSEMBL	ENSEMBL_Sanger	r	SNP			A	A							G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4227587					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6390591	AI448617_366	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss50669011	NES14018895	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32666217 () rs orientation: reverse

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr676252	regulatory region 676252	1147 bp proximal
Tssr84301	transcription start site region 84301	460 bp downstream
Tssr84302	transcription start site region 84302	271 bp downstream
Tssr84303	transcription start site region 84303	155 bp downstream