rs4227962 SNP Detail

Summary

• ID
  rs4227962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115061588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAGGAA GGGCAGCCGA
  GGCCCGTGGG CACACCTCTC ACCTGCCAAG GCTGCCGTGG GTAACCTTGA GCTCCGTTTT
  ATTCACGAGA GTTGGTGTTC TTTATTTCTC ACGTTGCCAC AGTCATTCTG CCATGGTCTG
  TCCTACTCAC CGTCTCCTGT CTTTTGTCAC GATGCAGGCT GAGGTGGCAC AGCCTGGAAA
  R
  GGAGCGAATT CCTGGCGGAG GAGGGGAGTG GCCACCGGCA GAGGGGGTAG TGGCCACCCG
  GCGGAGGGGA GAGTGGCCAC CCTGGGGTGA TGCTTGTTCT GATCCAAGGC TGTCTGTCCA
  CATCCTAGAA AGAGCAAGCA GGCCTTCCAG TTGCACAAGG TGACAGGAAG CCACTGGGGG
  CTGATATGGA ACCTTCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6390967	AI450237_76	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4227962					SNP	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6390967	AI450237_76	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115061588 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	356 bp upstream
Osbpl10	oxysterol binding protein-like 10	295 bp downstream