rs4227968 SNP Detail

Summary

• ID
  rs4227968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115061709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTCTGC CATGGTCTGT
  CCTACTCACC GTCTCCTGTC TTTTGTCACG ATGCAGGCTG AGGTGGCACA GCCTGGAAAA
  GGAGCGAATT CCTGGCGGAG GAGGGGAGTG GCCACCGGCA GAGGGGGTAG TGGCCACCCG
  GCGGAGGGGA GAGTGGCCAC CCTGGGGTGA TGCTTGTTCT GATCCAAGGC TGTCTGTCCA
  Y
  ATCCTAGAAA GAGCAAGCAG GCCTTCCAGT TGCACAAGGT GACAGGAAGC CACTGGGGGC
  TGATATGGAA CCTTCTAGAA GGGAGTGACT CCTGAGGAAT CAGGGCCAGG CCCACCAGGT
  GGTTTTATCC AGTCTCTCTG ACACTTCCCA TGCCCAGAGC ATGAGACCCT GTGTTCTTCA
  CAGCCGGAAA GAAATCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6390973	AI450237_197	TWGNF	TWGNF-Mouse	f	SNP	C			C		C			C	T						T					C																								T
ss16378790	09.117.606	TWGNF	TWGNF-Mouse-2	f	SNP		T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C
ss61227454	NES16843234	PERLEGEN	MM_PANEL2	f	SNP		T		C	C	C	T		C							C					C		C			C					C		C			C			C									T
ss137004622	ENSMUSSNP4319736	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	C																	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4227968					SNP	C	T	T	C	C	C	T	C	C	?	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	?	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6390973	AI450237_197	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss61227454	NES16843234	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115061709 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	235 bp upstream
Osbpl10	oxysterol binding protein-like 10	416 bp downstream