rs4227970 SNP Detail

Summary

• ID
  rs4227970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115061895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGTCTG TCCACATCCT
  AGAAAGAGCA AGCAGGCCTT CCAGTTGCAC AAGGTGACAG GAAGCCACTG GGGGCTGATA
  TGGAACCTTC TAGAAGGGAG TGACTCCTGA GGAATCAGGG CCAGGCCCAC CAGGTGGTTT
  TATCCAGTCT CTCTGACACT TCCCATGCCC AGAGCATGAG ACCCTGTGTT CTTCACAGCC
  R
  GAAAGAAATC ACACGGTCAT GACAAAGGGC TCTGGAAGGT CAATACACGC ATGCCTACAC
  TACACGGACC ACCACTGCCT CATATCTAGT TGGGGAAAGA GAACAAGTAG TCTTATTTCT
  TTTCCTTAAT TTTGACCCAA GCTGCCAGAA AGCCTCTGTA ACTAGGACAG CCACGAGCCC
  CATGAGCCCC CCAGTGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6390975	AI450237_383	TWGNF	TWGNF-Mouse	f	SNP	G		G		G		G	G	A	G							G
ss61227452	NES16843236	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G		A	G	G	G	G	G	G	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4227970					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6390975	AI450237_383	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss61227452	NES16843236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115061895 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	49 bp upstream
Osbpl10	oxysterol binding protein-like 10	602 bp downstream