rs4228062 SNP Detail

Summary

• ID
  rs4228062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122849110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAATTGG GATAATCTAT
  TCTTTTTATT TAAAATTTAA TTTTATGTAT TAATGTGTAT CTGTGTTCAG GTGTATATAT
  ATGTACATGA GGATAGGTGC CTTTGGAGGC CAGAAAATAG TGGAACCCCT GGAGGTATGA
  GGTTGGGAGG CACTTGTGGG AAGGTTGCAA GCTGCCTAAC TGCTAAGCAA TCTCTCCAAA
  Y
  CCCAGTAATC CATCCTTTTA TTTCATCCAC AAAACCACCC GCATGAGAAG CAAGGTAGCA
  TGTAAGAATG TCCATGAAAA AGCTCTTTAA CAGGGAATAA AGTGTTTCTT CCAAGCCCCA
  TACATTAAAT ATTATTTGTA TTTTATATAT CAACAAAACA AGTTTTGCTG TGTAGCCCTG
  GCTATGTAGA GCTATTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6391067	AU015427_62	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4228062					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391067	AU015427_62	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122849110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22546	CpG island 22546	766 bp proximal
Gm9856	predicted gene 9856	within coordinates
Gm49323	predicted gene, 49323	1373 bp upstream
Kif15	kinesin family member 15	1312 bp downstream
Tmem42	transmembrane protein 42	1281 bp upstream
Tssr87875	transcription start site region 87875	1074 bp upstream
Tssr87876	transcription start site region 87876	1270 bp upstream
Tssr92115	transcription start site region 92115	1169 bp downstream
Tssr92116	transcription start site region 92116	1370 bp downstream
Tssr92117	transcription start site region 92117	1477 bp downstream