rs4228063 SNP Detail

Summary

• ID
  rs4228063
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122849136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTAAAAT TTAATTTTAT
  GTATTAATGT GTATCTGTGT TCAGGTGTAT ATATATGTAC ATGAGGATAG GTGCCTTTGG
  AGGCCAGAAA ATAGTGGAAC CCCTGGAGGT ATGAGGTTGG GAGGCACTTG TGGGAAGGTT
  GCAAGCTGCC TAACTGCTAA GCAATCTCTC CAAACCCCAG TAATCCATCC TTTTATTTCA
  K
  CCACAAAACC ACCCGCATGA GAAGCAAGGT AGCATGTAAG AATGTCCATG AAAAAGCTCT
  TTAACAGGGA ATAAAGTGTT TCTTCCAAGC CCCATACATT AAATATTATT TGTATTTTAT
  ATATCAACAA AACAAGTTTT GCTGTGTAGC CCTGGCTATG TAGAGCTATT TAGAGCAGGC
  TGTTCTCGGA CTCACAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MSM/Ms	SPRET/EiJ
ss6391068	AU015427_88	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T		G
ss137074940	ENSMUSSNP6819989	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MSM/Ms	SPRET/EiJ
rs4228063					SNP	T	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391068	AU015427_88	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122849136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22546	CpG island 22546	740 bp proximal
Gm9856	predicted gene 9856	within coordinates
Gm49323	predicted gene, 49323	1347 bp upstream
Kif15	kinesin family member 15	1338 bp downstream
Rr205950	regulatory region 205950	64 bp proximal
Tmem42	transmembrane protein 42	1255 bp upstream
Tssr87875	transcription start site region 87875	1048 bp upstream
Tssr87876	transcription start site region 87876	1244 bp upstream
Tssr92115	transcription start site region 92115	1143 bp downstream
Tssr92116	transcription start site region 92116	1344 bp downstream
Tssr92117	transcription start site region 92117	1451 bp downstream