rs4228066 SNP Detail

Summary

• ID
  rs4228066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122849334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCACAAA ACCACCCGCA
  TGAGAAGCAA GGTAGCATGT AAGAATGTCC ATGAAAAAGC TCTTTAACAG GGAATAAAGT
  GTTTCTTCCA AGCCCCATAC ATTAAATATT ATTTGTATTT TATATATCAA CAAAACAAGT
  TTTGCTGTGT AGCCCTGGCT ATGTAGAGCT ATTTAGAGCA GGCTGTTCTC GGACTCACAG
  W
  GATCCACTTG CCTCTGCTTC CTCATGTGTA CCAACCACCA CACTTAGCTC ACGTTATACA
  CTTCTACAGC TCTCCTTTAA GGAAATGTAT CCCTAACATA TATCCATACA CACTGCCATT
  GACTGAATTC AGGATTTTTC ATGTATTATG GAAGCACTGA GCTATAACCC CAACTCTCCT
  TTATTACAAA AACAAAAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6391071	AU015427_286	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4228066					SNP	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391071	AU015427_286	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122849334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22546	CpG island 22546	542 bp proximal
Gm9856	predicted gene 9856	within coordinates
Gm49323	predicted gene, 49323	1149 bp upstream
Kif15	kinesin family member 15	1536 bp downstream
Rr205950	regulatory region 205950	within coordinates
Tmem42	transmembrane protein 42	1057 bp upstream
Tssr87875	transcription start site region 87875	850 bp upstream
Tssr87876	transcription start site region 87876	1046 bp upstream
Tssr92115	transcription start site region 92115	945 bp downstream
Tssr92116	transcription start site region 92116	1146 bp downstream
Tssr92117	transcription start site region 92117	1253 bp downstream