rs4228239 SNP Detail

Summary

• ID
  rs4228239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:67375613 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTACT CGGATACGGG AGATCCAGGG
  R
  TCTCTTCTCT CCAGTCATGT CAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6391245	X06746_222	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4228239					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391245	X06746_222	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67375613 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1669	CpG island 1669	1854 bp distal
Cpgi1670	CpG island 1670	564 bp distal
Egr2	early growth response 2	Coding-NonSynonymous
Rr401960	regulatory region 401960	1815 bp downstream
Rr433076	regulatory region 433076	1903 bp distal
Rr433077	regulatory region 433077	1090 bp distal
Rr433078	regulatory region 433078	242 bp distal
Tssr93834	transcription start site region 93834	1906 bp downstream
Tssr93835	transcription start site region 93835	1709 bp downstream
Tssr93836	transcription start site region 93836	1588 bp downstream
Tssr93837	transcription start site region 93837	1474 bp downstream
Tssr93838	transcription start site region 93838	1284 bp downstream
Tssr93839	transcription start site region 93839	1214 bp downstream
Tssr93840	transcription start site region 93840	520 bp downstream
Tssr93841	transcription start site region 93841	15 bp upstream
Tssr93842	transcription start site region 93842	70 bp upstream
Tssr93843	transcription start site region 93843	155 bp upstream
Tssr93844	transcription start site region 93844	191 bp upstream
Tssr93845	transcription start site region 93845	233 bp upstream
Tssr93846	transcription start site region 93846	264 bp upstream
Tssr93847	transcription start site region 93847	964 bp upstream
Tssr97953	transcription start site region 97953	611 bp upstream
Tssr97954	transcription start site region 97954	354 bp downstream