rs4228270 SNP Detail

Summary

• ID
  rs4228270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76544906 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TTTGCTTTCA GAGTGGAAGG ACTAGCCACT AAGGACCAGA CCAAGATGCA
  R
  GTAGGTCACT GACAAGCACC TGATGAAGAG GAGGGGTCTC CTCCAAGTTT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6391276	AI747156_103	TWGNF	TWGNF-Mouse	f	SNP	A		A		A		A	A		A						G
ss8738828	WI_WGS_10_77145950	WI	MOUSE	r	SNP								T	C
ss61288981	NES16903933	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T	T	T			T	T	C	T	T	C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4228270					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391276	AI747156_103	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss61288981	NES16903933	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76544906 () rs orientation: reverse

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr98195	transcription start site region 98195	30 bp downstream
Tssr98196	transcription start site region 98196	226 bp downstream
Tssr98197	transcription start site region 98197	419 bp downstream
Tssr98198	transcription start site region 98198	463 bp downstream
Tssr98199	transcription start site region 98199	570 bp downstream
Tssr98200	transcription start site region 98200	611 bp downstream