rs4228271 SNP Detail

Summary

• ID
  rs4228271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76544774 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             GGGACCAGGG GGAGACAAGT CACTATTTTG AGGGAGAAAG CTCTGGATTG
  Y
  TTCTGACAGG ACACTTGAGT GTGAACTGTC CAAGCTAAGC CTCTGGGTGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6391277	AI747156_235	TWGNF	TWGNF-Mouse	f	SNP	T		T		T		T	T		T					C
ss8738219	WI_WGS_10_77145818	WI	MOUSE	r	SNP								A	G
ss61288983	NES16903931	PERLEGEN	MM_PANEL2	r	SNP		A	A	A	A	A	A			A	A	A	A	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4228271					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391277	AI747156_235	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss61288983	NES16903931	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76544774 () rs orientation: reverse

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	mRNA-UTR
Tssr98195	transcription start site region 98195	162 bp downstream
Tssr98196	transcription start site region 98196	358 bp downstream
Tssr98197	transcription start site region 98197	551 bp downstream
Tssr98198	transcription start site region 98198	595 bp downstream
Tssr98199	transcription start site region 98199	702 bp downstream
Tssr98200	transcription start site region 98200	743 bp downstream