rs4228534 SNP Detail

Summary

• ID
  rs4228534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128046180 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CCATACATGT CTCCCTAGTG TCTCTTTCCC TTTGTCACAT AACTGGCACA
  Y
  TGGTTATGGC AAACTGCCTA GGTATCAGGT ATCCAGAAGA CAGATGGACT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss6391542	AA408693_136	TWGNF	TWGNF-Mouse	f	SNP	T		T		T		T	T	C										T
ss50948653	NES14143294	PERLEGEN	MM_PANEL2	r	SNP		A	A	A	A	A	A		G	A	A	A		G	A	A	G			A
ss323532321	CHEV_10_127647367	CHEVERUD	SCREENING_POP	r	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs4228534					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391542	AA408693_136	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss50948653	NES14143294	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128046180 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1307 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	307 bp downstream
Rr224447	regulatory region 224447	220 bp proximal
Rr402345	regulatory region 402345	1399 bp upstream
Spryd4	SPRY domain containing 4	within coordinates
Tssr99849	transcription start site region 99849	1455 bp downstream
Tssr99850	transcription start site region 99850	1477 bp downstream