rs4228727 SNP Detail

Summary

• ID
  rs4228727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                              CAGT CATTCTACCC CCACCCCAGA TTCTCTTTCT
  TATTACATAA AAGACAAGCC TGGCACAACT GTGTGTCTGA ACCACTGTGG ACACGTGACA
  R
  TTGTCCCAGT GTGTGCATGG CTACACAGCC ACGTATCTGC CTGCTTGAAA CCCAGGGATG
  GTCCATCTGT GTTTACGGCT TGGCACAACA CCCTCATATT TTTTTCAGCT TTCTGTTCCA
  AATGAGCCCA AAGGAAACAC AAGTTCTAGG TCCAATGGTT CTGCTCAAAC CTGAACATCA
  TTCTTGGGGC CAGCATCTCC CACATGCCCA CACTACACAC CACCAGCCTC CTTCTTCCTT
  CCTGAAGGAC CCTCCTGAGC CCCCAAGCCC ATCCCACAGT GCTCCTGAGA CCAGCCAAGA
  CAACTGTGAG CGCGATGGCC GTGTACCCCA GGTCAGGGGT GGTGTCTCTA TGA       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6391737	AA960521_95	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4228727					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391737	AA960521_95	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800660 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	951 bp downstream
Tssr3502	transcription start site region 3502	190 bp upstream
Tssr3503	transcription start site region 3503	281 bp upstream
Tssr101561	transcription start site region 101561	1277 bp downstream
Tssr101562	transcription start site region 101562	1230 bp downstream
Tssr101563	transcription start site region 101563	1218 bp downstream
Tssr101564	transcription start site region 101564	1197 bp downstream
Tssr101565	transcription start site region 101565	767 bp downstream
Tssr101566	transcription start site region 101566	721 bp downstream
Tssr101567	transcription start site region 101567	358 bp downstream
Tssr101568	transcription start site region 101568	284 bp downstream
Tssr101569	transcription start site region 101569	201 bp downstream
Tssr101570	transcription start site region 101570	150 bp downstream
Tssr101571	transcription start site region 101571	74 bp downstream
Tssr101572	transcription start site region 101572	30 bp downstream
Tssr101573	transcription start site region 101573	3 bp downstream
Tssr101574	transcription start site region 101574	10 bp upstream
Tssr101575	transcription start site region 101575	58 bp upstream
Tssr101576	transcription start site region 101576	72 bp upstream
Tssr101577	transcription start site region 101577	101 bp upstream
Tssr101578	transcription start site region 101578	184 bp upstream
Tssr108007	transcription start site region 108007	1260 bp upstream
Tssr108008	transcription start site region 108008	1199 bp upstream
Tssr108009	transcription start site region 108009	1183 bp upstream
Tssr108010	transcription start site region 108010	763 bp upstream
Tssr108011	transcription start site region 108011	147 bp upstream
Tssr108012	transcription start site region 108012	66 bp upstream
Tssr108013	transcription start site region 108013	46 bp upstream
Tssr108014	transcription start site region 108014	31 bp upstream
Tssr108015	transcription start site region 108015	41 bp downstream
Tssr108016	transcription start site region 108016	93 bp downstream
Tssr108017	transcription start site region 108017	144 bp downstream
Tssr108018	transcription start site region 108018	159 bp downstream
Tssr108019	transcription start site region 108019	195 bp downstream
Tssr108020	transcription start site region 108020	251 bp downstream
Tssr108021	transcription start site region 108021	271 bp downstream
Tssr108022	transcription start site region 108022	282 bp downstream
Tssr108023	transcription start site region 108023	535 bp downstream