rs4228728 SNP Detail

Summary

• ID
  rs4228728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGCTC TTCAGGAAGG
  AAGCCACATT CCCAGTCATT CTACCCCCAC CCCAGATTCT CTTTCTTATT ACATAAAAGA
  CAAGCCTGGC ACAACTGTGT GTCTGAACCA CTGTGGACAC GTGACAATTG TCCCAGTGTG
  TGCATGGCTA CACAGCCACG TATCTGCCTG CTTGAAACCC AGGGATGGTC CATCTGTGTT
  Y
  ACGGCTTGGC ACAACACCCT CATATTTTTT TCAGCTTTCT GTTCCAAATG AGCCCAAAGG
  AAACACAAGT TCTAGGTCCA ATGGTTCTGC TCAAACCTGA ACATCATTCT TGGGGCCAGC
  ATCTCCCACA TGCCCACACT ACACACCACC AGCCTCCTTC TTCCTTCCTG AAGGACCCTC
  CTGAGCCCCC AAGCCCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss6391738	AA960521_169	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T			T
ss323674148	CHEV_11_54723410	CHEVERUD	SCREENING_POP	f	SNP								T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs4228728					SNP	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391738	AA960521_169	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800734 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	877 bp downstream
Tssr3502	transcription start site region 3502	264 bp upstream
Tssr3503	transcription start site region 3503	207 bp upstream
Tssr101561	transcription start site region 101561	1351 bp downstream
Tssr101562	transcription start site region 101562	1304 bp downstream
Tssr101563	transcription start site region 101563	1292 bp downstream
Tssr101564	transcription start site region 101564	1271 bp downstream
Tssr101565	transcription start site region 101565	841 bp downstream
Tssr101566	transcription start site region 101566	795 bp downstream
Tssr101567	transcription start site region 101567	432 bp downstream
Tssr101568	transcription start site region 101568	358 bp downstream
Tssr101569	transcription start site region 101569	275 bp downstream
Tssr101570	transcription start site region 101570	224 bp downstream
Tssr101571	transcription start site region 101571	148 bp downstream
Tssr101572	transcription start site region 101572	104 bp downstream
Tssr101573	transcription start site region 101573	77 bp downstream
Tssr101574	transcription start site region 101574	52 bp downstream
Tssr101575	transcription start site region 101575	5 bp downstream
Tssr101576	transcription start site region 101576	within coordinates
Tssr101577	transcription start site region 101577	27 bp upstream
Tssr101578	transcription start site region 101578	110 bp upstream
Tssr108007	transcription start site region 108007	1334 bp upstream
Tssr108008	transcription start site region 108008	1273 bp upstream
Tssr108009	transcription start site region 108009	1257 bp upstream
Tssr108010	transcription start site region 108010	837 bp upstream
Tssr108011	transcription start site region 108011	221 bp upstream
Tssr108012	transcription start site region 108012	140 bp upstream
Tssr108013	transcription start site region 108013	120 bp upstream
Tssr108014	transcription start site region 108014	105 bp upstream
Tssr108015	transcription start site region 108015	24 bp upstream
Tssr108016	transcription start site region 108016	19 bp downstream
Tssr108017	transcription start site region 108017	70 bp downstream
Tssr108018	transcription start site region 108018	85 bp downstream
Tssr108019	transcription start site region 108019	121 bp downstream
Tssr108020	transcription start site region 108020	177 bp downstream
Tssr108021	transcription start site region 108021	197 bp downstream
Tssr108022	transcription start site region 108022	208 bp downstream
Tssr108023	transcription start site region 108023	461 bp downstream