rs4228729 SNP Detail

Summary

• ID
  rs4228729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        CAGT CATTCTACCC CCACCCCAGA TTCTCTTTCT TATTACATAA AAGACAAGCC
  TGGCACAACT GTGTGTCTGA ACCACTGTGG ACACGTGACA ATTGTCCCAG TGTGTGCATG
  GCTACACAGC CACGTATCTG CCTGCTTGAA ACCCAGGGAT GGTCCATCTG TGTTTACGGC
  Y
  TGGCACAACA CCCTCATATT TTTTTCAGCT TTCTGTTCCA AATGAGCCCA AAGGAAACAC
  AAGTTCTAGG TCCAATGGTT CTGCTCAAAC CTGAACATCA TTCTTGGGGC CAGCATCTCC
  CACATGCCCA CACTACACAC CACCAGCCTC CTTCTTCCTT CCTGAAGGAC CCTCCTGAGC
  CCCCAAGCCC ATCCCACAGT GCTCCTGAGA CCAGCCAAGA CAACTGTGAG CGCGATGGCC
  GTGTACCCCA GGTCAGGGGT GGTGTCTCTA TGA                             
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6391739	AA960521_175	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4228729					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391739	AA960521_175	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800740 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	871 bp downstream
Tssr3502	transcription start site region 3502	270 bp upstream
Tssr3503	transcription start site region 3503	201 bp upstream
Tssr101561	transcription start site region 101561	1357 bp downstream
Tssr101562	transcription start site region 101562	1310 bp downstream
Tssr101563	transcription start site region 101563	1298 bp downstream
Tssr101564	transcription start site region 101564	1277 bp downstream
Tssr101565	transcription start site region 101565	847 bp downstream
Tssr101566	transcription start site region 101566	801 bp downstream
Tssr101567	transcription start site region 101567	438 bp downstream
Tssr101568	transcription start site region 101568	364 bp downstream
Tssr101569	transcription start site region 101569	281 bp downstream
Tssr101570	transcription start site region 101570	230 bp downstream
Tssr101571	transcription start site region 101571	154 bp downstream
Tssr101572	transcription start site region 101572	110 bp downstream
Tssr101573	transcription start site region 101573	83 bp downstream
Tssr101574	transcription start site region 101574	58 bp downstream
Tssr101575	transcription start site region 101575	11 bp downstream
Tssr101576	transcription start site region 101576	within coordinates
Tssr101577	transcription start site region 101577	21 bp upstream
Tssr101578	transcription start site region 101578	104 bp upstream
Tssr108007	transcription start site region 108007	1340 bp upstream
Tssr108008	transcription start site region 108008	1279 bp upstream
Tssr108009	transcription start site region 108009	1263 bp upstream
Tssr108010	transcription start site region 108010	843 bp upstream
Tssr108011	transcription start site region 108011	227 bp upstream
Tssr108012	transcription start site region 108012	146 bp upstream
Tssr108013	transcription start site region 108013	126 bp upstream
Tssr108014	transcription start site region 108014	111 bp upstream
Tssr108015	transcription start site region 108015	30 bp upstream
Tssr108016	transcription start site region 108016	13 bp downstream
Tssr108017	transcription start site region 108017	64 bp downstream
Tssr108018	transcription start site region 108018	79 bp downstream
Tssr108019	transcription start site region 108019	115 bp downstream
Tssr108020	transcription start site region 108020	171 bp downstream
Tssr108021	transcription start site region 108021	191 bp downstream
Tssr108022	transcription start site region 108022	202 bp downstream
Tssr108023	transcription start site region 108023	455 bp downstream