rs4228730 SNP Detail

Summary

• ID
  rs4228730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  CAGTCA TTCTACCCCC
  ACCCCAGATT CTCTTTCTTA TTACATAAAA GACAAGCCTG GCACAACTGT GTGTCTGAAC
  CACTGTGGAC ACGTGACAAT TGTCCCAGTG TGTGCATGGC TACACAGCCA CGTATCTGCC
  TGCTTGAAAC CCAGGGATGG TCCATCTGTG TTTACGGCTT GGCACAACAC CCTCATATTT
  TTTTCAGCTT TCTGTTCCAA ATGAGCCCAA AGGAAACACA AGTTCTAGGT CCAATGGTTC
  Y
  GCTCAAACCT GAACATCATT CTTGGGGCCA GCATCTCCCA CATGCCCACA CTACACACCA
  CCAGCCTCCT TCTTCCTTCC TGAAGGACCC TCCTGAGCCC CCAAGCCCAT CCCACAGTGC
  TCCTGAGACC AGCCAAGACA ACTGTGAGCG CGATGGCCGT GTACCCCAGG TCAGGGGTGG
  TGTCTCTATG A                                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6391740	AA960521_257	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4228730					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391740	AA960521_257	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800822 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	789 bp downstream
Tssr3502	transcription start site region 3502	352 bp upstream
Tssr3503	transcription start site region 3503	119 bp upstream
Tssr101561	transcription start site region 101561	1439 bp downstream
Tssr101562	transcription start site region 101562	1392 bp downstream
Tssr101563	transcription start site region 101563	1380 bp downstream
Tssr101564	transcription start site region 101564	1359 bp downstream
Tssr101565	transcription start site region 101565	929 bp downstream
Tssr101566	transcription start site region 101566	883 bp downstream
Tssr101567	transcription start site region 101567	520 bp downstream
Tssr101568	transcription start site region 101568	446 bp downstream
Tssr101569	transcription start site region 101569	363 bp downstream
Tssr101570	transcription start site region 101570	312 bp downstream
Tssr101571	transcription start site region 101571	236 bp downstream
Tssr101572	transcription start site region 101572	192 bp downstream
Tssr101573	transcription start site region 101573	165 bp downstream
Tssr101574	transcription start site region 101574	140 bp downstream
Tssr101575	transcription start site region 101575	93 bp downstream
Tssr101576	transcription start site region 101576	72 bp downstream
Tssr101577	transcription start site region 101577	50 bp downstream
Tssr101578	transcription start site region 101578	22 bp upstream
Tssr108007	transcription start site region 108007	1422 bp upstream
Tssr108008	transcription start site region 108008	1361 bp upstream
Tssr108009	transcription start site region 108009	1345 bp upstream
Tssr108010	transcription start site region 108010	925 bp upstream
Tssr108011	transcription start site region 108011	309 bp upstream
Tssr108012	transcription start site region 108012	228 bp upstream
Tssr108013	transcription start site region 108013	208 bp upstream
Tssr108014	transcription start site region 108014	193 bp upstream
Tssr108015	transcription start site region 108015	112 bp upstream
Tssr108016	transcription start site region 108016	50 bp upstream
Tssr108017	transcription start site region 108017	9 bp upstream
Tssr108018	transcription start site region 108018	within coordinates
Tssr108019	transcription start site region 108019	33 bp downstream
Tssr108020	transcription start site region 108020	89 bp downstream
Tssr108021	transcription start site region 108021	109 bp downstream
Tssr108022	transcription start site region 108022	120 bp downstream
Tssr108023	transcription start site region 108023	373 bp downstream