rs4228860 SNP Detail

Summary

• ID
  rs4228860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72905328 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

          GT TTGAGACCCT GCTCAGTGCC TGCACCTGCC AGTTGGGGCT GACCCAAGGC
  TGATTGGGAG CTTAAGAGTC AGAAAGCTCT AGGATAGCAA TTCTTAAGCC TCAGCTACAA
  AGTGCCCTGT GTTTCTATTT TAGGAGGAGG TGGGGTGCGT ATCAGGCACC CGCACTGTTG
  ATGAGCCTCC CAGGGAATTC CTTTGGAACT TCCTACAATG AAAACATCTG TTGCTATCCA
  GTATGGCAGT CACAGGCCAA AAGTGTCCCC ATAACTAGTT CAACCCAGCC atcttttttt
  W
  ttatatttta attaatttaa gttcaaactg acacatctgg ctagtggcta ccatgtggaa
  gagcccaAAG CCAGGCAGGT GAGGCTGTGG GGTAGACAGT GGCAGCCTGA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S4/SvJae	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6391870	AI323649_293	TWGNF	TWGNF-Mouse	f	SNP	A		A	A	A	A	A	A	T
		KMRGMT	KMRGMT-Mouse				A				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S4/SvJae	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4228860					SNP	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6391870	AI323649_293	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72905328 () rs orientation: reverse

Symbol	Name	Function Class
4732414G09Rik	RIKEN cDNA 4732414G09 gene	1354 bp downstream
P2rx1	purinergic receptor P2X, ligand-gated ion channel, 1	within coordinates
Rr369285	regulatory region 369285	691 bp upstream