rs4229031 SNP Detail

Summary

• ID
  rs4229031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96197100 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCCTG GGCCTCTCAG TCCCCTCATC
  R
  AGCCTCAGTG GGCCAAGCCT GGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392043	AI385717_183	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229031					SNP	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392043	AI385717_183	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96197100 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi3644	CpG island 3644	1028 bp distal
Gm74526	predicted gene, 74526	809 bp upstream
Hoxb5	homeobox B5	153 bp downstream
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Rr455365	regulatory region 455365	1424 bp distal
Rr455366	regulatory region 455366	624 bp proximal
Rr455367	regulatory region 455367	820 bp proximal
Tssr104501	transcription start site region 104501	265 bp upstream
Tssr104502	transcription start site region 104502	778 bp upstream
Tssr104503	transcription start site region 104503	795 bp upstream
Tssr104504	transcription start site region 104504	843 bp upstream
Tssr104505	transcription start site region 104505	857 bp upstream
Tssr110327	transcription start site region 110327	627 bp downstream