rs4229033 SNP Detail

Summary

• ID
  rs4229033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96197060 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTTTACCAGA CTCAAAGGAC
  CAGAGGCCTT CTTGCTCAGA ATTTAGGCCC AAATTACTCT TCCTGGAGCA TTTTCCAAAG
  GCTTTCCATA CCCGCTGAGT ATCAGGATGG GGTCCAGCTG AAGGCCACGT GAAGTTCCTG
  GGCCTCTCAG TCCCCTCATC AAGCCTCAGT GGGCCAAGCC TGGGAGTGAG GTGGCTTTGA
  S
  GGATTTCTGG TGGGCTTCCC TATGCCCTAG ATTTATTGAA GATGGTCTTA GACCAGGTTG
  TGCTGGATGG TGAAAGAGTC AGACCCTCTG AGAAAAGACA AGTAGAGGGC ACTGGAGTGG
  GGGAAACATT TATTCAACTT CAAGGAAAGC TACAGACATA CCAAAAGCTA ATCACTGAGA
  CAGGCCTGGC AAAGACAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392045	AI385717_223	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229033					SNP	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392045	AI385717_223	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96197060 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi3643	CpG island 3643	1990 bp distal
Cpgi3644	CpG island 3644	988 bp distal
Gm74526	predicted gene, 74526	849 bp upstream
Hoxb5	homeobox B5	113 bp downstream
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Rr455365	regulatory region 455365	1384 bp distal
Rr455366	regulatory region 455366	664 bp proximal
Rr455367	regulatory region 455367	860 bp proximal
Tssr104501	transcription start site region 104501	305 bp upstream
Tssr104502	transcription start site region 104502	818 bp upstream
Tssr104503	transcription start site region 104503	835 bp upstream
Tssr104504	transcription start site region 104504	883 bp upstream
Tssr104505	transcription start site region 104505	897 bp upstream
Tssr110327	transcription start site region 110327	667 bp downstream