rs4229034 SNP Detail

Summary

• ID
  rs4229034
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96196811 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCGCT CACTACAAAT GGTCTTGGAA
  K
  CGAAATGGGT GAGAGAGGAA GTGAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392046	AI385717_472	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229034					SNP	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392046	AI385717_472	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96196811 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi3643	CpG island 3643	1741 bp distal
Cpgi3644	CpG island 3644	739 bp distal
Gm74526	predicted gene, 74526	1098 bp upstream
Hoxb5	homeobox B5	within coordinates
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Rr455365	regulatory region 455365	1135 bp distal
Rr455366	regulatory region 455366	913 bp proximal
Rr455367	regulatory region 455367	1109 bp proximal
Tssr104497	transcription start site region 104497	1944 bp downstream
Tssr104498	transcription start site region 104498	1911 bp downstream
Tssr104499	transcription start site region 104499	1893 bp downstream
Tssr104500	transcription start site region 104500	1846 bp downstream
Tssr104501	transcription start site region 104501	554 bp upstream
Tssr104502	transcription start site region 104502	1067 bp upstream
Tssr104503	transcription start site region 104503	1084 bp upstream
Tssr104504	transcription start site region 104504	1132 bp upstream
Tssr104505	transcription start site region 104505	1146 bp upstream
Tssr110327	transcription start site region 110327	916 bp downstream