rs4229277 SNP Detail

Summary

• ID
  rs4229277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25145121 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                      CTACAGA ACAGTTGCCT TTACaaaaac
  R
  aaaagaaaga aaaaaaagaa agaaaagaaa TGCCAGTAAC TTACTATGAA GGTGTCAGGA
  CCAAGTGTGG CTGACTTTTA TGAGCCCAGT GGCGGTACAC TGAGGTGGTA ACCTCAGCTG
  TAATTAATCT TATCGCCACA AATTCCATAG TGATTCTCTT TTCCCAAAAC TGTAGTCCTC
  TGAGATTTCT CTGGCTAGCT GAAGACGGCT ACCCCGAGCC TTACCCCTGT GCTCTGGGAT
  CCAGATTTCC ATATCTGTTA ACTAAAGGGC TGTTTTCAAT CAAATAATTG TTACAAGAAG
  CAGACTGGCG CCTGTGAGCG GGCTGTTAGA GATCCAAATA GGAGACTGGG TTTGGGAAGT
  TTTCCCCTGG AGTCTCCGCT ATTTTCATGT TTAATTTGTG CTGCTGGGGC CGGGTATGTG
  TGCCGCATCT GGACGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6392294	C78922_28	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4229277					SNP	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392294	C78922_28	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25145121 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	365 bp proximal
Gm59395	predicted gene, 59395	1338 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1896 bp downstream
Rr403250	regulatory region 403250	940 bp upstream
Tssr112979	transcription start site region 112979	595 bp upstream
Tssr112980	transcription start site region 112980	1315 bp upstream
Tssr112981	transcription start site region 112981	1330 bp upstream
Tssr115883	transcription start site region 115883	592 bp upstream
Tssr115884	transcription start site region 115884	599 bp downstream
Tssr115885	transcription start site region 115885	958 bp downstream