rs4229280 SNP Detail

Summary

• ID
  rs4229280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25145023 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GACTT TTATGAGCCC AGTGGCGGTA
  Y
  ACTGAGGTGG TAACCTCAGC TGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6392297	C78922_126	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4229280					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392297	C78922_126	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25145023 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1990 bp distal
Cpgi4500	CpG island 4500	463 bp proximal
Gm59395	predicted gene, 59395	1436 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1798 bp downstream
Rr403250	regulatory region 403250	1038 bp upstream
Rr463952	regulatory region 463952	1237 bp distal
Rr463954	regulatory region 463954	1053 bp proximal
Rr463955	regulatory region 463955	1447 bp proximal
Tssr112979	transcription start site region 112979	693 bp upstream
Tssr112980	transcription start site region 112980	1413 bp upstream
Tssr112981	transcription start site region 112981	1428 bp upstream
Tssr115883	transcription start site region 115883	494 bp upstream
Tssr115884	transcription start site region 115884	697 bp downstream
Tssr115885	transcription start site region 115885	1056 bp downstream