rs4229281 SNP Detail

Summary

• ID
  rs4229281
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25145013 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCCC AGTGGCGGTA CACTGAGGTG
  S
  TAACCTCAGC TGTAATTAAT CTTAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss6392298	C78922_136	TWGNF	TWGNF-Mouse	f	SNP	C		C	C	C	G	C			C
ss39025735	mCV22302978	ABI	CRAMUS_MOUSE	r	SNP		G	G			C	G
ss137401587	ENSMUSSNP4239224	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G				G
ss323938297	CHEV_12_25779879	CHEVERUD	SCREENING_POP	r	SNP								G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs4229281					SNP	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392298	C78922_136	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25145013 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1980 bp distal
Cpgi4500	CpG island 4500	473 bp proximal
Gm59395	predicted gene, 59395	1446 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1788 bp downstream
Rr403250	regulatory region 403250	1048 bp upstream
Rr463952	regulatory region 463952	1227 bp distal
Rr463954	regulatory region 463954	1063 bp proximal
Rr463955	regulatory region 463955	1457 bp proximal
Tssr112979	transcription start site region 112979	703 bp upstream
Tssr112980	transcription start site region 112980	1423 bp upstream
Tssr112981	transcription start site region 112981	1438 bp upstream
Tssr115883	transcription start site region 115883	484 bp upstream
Tssr115884	transcription start site region 115884	707 bp downstream
Tssr115885	transcription start site region 115885	1066 bp downstream