rs4229283 SNP Detail

Summary

• ID
  rs4229283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25144945 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGATT CTCTTTTCCC AAAACTGTAG
  Y
  CCTCTGAGAT TTCTCTGGCT AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss6392300	C78922_204	TWGNF	TWGNF-Mouse	f	SNP	C			C	C			C	T											C																							T
ss16379931	C12.023.550	TWGNF	TWGNF-Mouse-2	f	SNP		C		C	C	C	C	C	T	T	C	T	T	C	T	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	T	C	C	C	T	C	C	C	C	T	C	C
ss137401584	ENSMUSSNP3194170	ENSEMBL	ENSEMBL_Sanger	r	SNP			G	G																G
ss323938296	CHEV_12_25779811	CHEVERUD	SCREENING_POP	r	SNP																										G																G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs4229283					SNP	C	C	C	C	C	C	C	C	T	T	C	T	T	C	T	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	T	C	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392300	C78922_204	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25144945 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1912 bp distal
Cpgi4500	CpG island 4500	541 bp proximal
Gm59395	predicted gene, 59395	1514 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1720 bp downstream
Rr403250	regulatory region 403250	1116 bp upstream
Rr463952	regulatory region 463952	1159 bp distal
Rr463954	regulatory region 463954	1131 bp proximal
Rr463955	regulatory region 463955	1525 bp proximal
Tssr112979	transcription start site region 112979	771 bp upstream
Tssr112980	transcription start site region 112980	1491 bp upstream
Tssr112981	transcription start site region 112981	1506 bp upstream
Tssr115883	transcription start site region 115883	416 bp upstream
Tssr115884	transcription start site region 115884	775 bp downstream
Tssr115885	transcription start site region 115885	1134 bp downstream