rs4229284 SNP Detail

Summary

• ID
  rs4229284
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25144870 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGT GCTCTGGGAT CCAGATTTCC
  M
  TATCTGTTAA CTAAAGGGCT GTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss6392301	C78922_279	TWGNF	TWGNF-Mouse	f	SNP	C		C	C	C	A	C	C			C
ss39034311	mCV22302979	ABI	CRAMUS_MOUSE	r	SNP		G	G			T		G
ss137401581	ENSMUSSNP5885049	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G
ss323938295	CHEV_12_25779736	CHEVERUD	SCREENING_POP	r	SNP									G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs4229284					SNP	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392301	C78922_279	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25144870 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4499	CpG island 4499	1837 bp distal
Cpgi4500	CpG island 4500	616 bp proximal
Gm59395	predicted gene, 59395	1589 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr369501	regulatory region 369501	1645 bp downstream
Rr403250	regulatory region 403250	1191 bp upstream
Rr463952	regulatory region 463952	1084 bp distal
Rr463954	regulatory region 463954	1206 bp proximal
Rr463955	regulatory region 463955	1600 bp proximal
Tssr112979	transcription start site region 112979	846 bp upstream
Tssr112980	transcription start site region 112980	1566 bp upstream
Tssr112981	transcription start site region 112981	1581 bp upstream
Tssr115883	transcription start site region 115883	341 bp upstream
Tssr115884	transcription start site region 115884	850 bp downstream
Tssr115885	transcription start site region 115885	1209 bp downstream