rs4229287 SNP Detail

Summary

• ID
  rs4229287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

               CCGGGAGG GAGCCGCCAC AGGGGGCTGA GCTGACTGCG CGGCACCAGG
  CTCGGTTCAG AATGAAGCGC GAGCCGGGCG GGGCGTCTTT TATGTGCACT CGCCCTGGCC
  GCTCAATCGG GCATCCCTGA ATTGCCATTG GTGGAAGGGC TCCCGTCCAT CATACCAGGC
  M
  AATTCTCCCA TTGGTGAGTA TGAGCTCTCG GTTCTTCCGC GTTCGCAGCC AATGCCTGTA
  GGGTGGGAGG AGCGGGCGAG AGCCCAGCTG GGGTGGCAAA TTGAGTACAG TGTGCGCTGG
  GCGCCCAGGG GGCCTGAGTG TGCAATTGTG CCCGCCTTAT TCCAATTCCC AGAGCTGGCA
  GGACCCCTGC CCCGGGGGTG TGCCCGGAGC TAGCTATACC CGCCCCCAGG ACTTCCAGCA
  GCCCCACTGT CTCCGCACAG CAGACGGGAA G                               
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392304	AI255428_169	TWGNF	TWGNF-Mouse	f	SNP	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229287					SNP	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392304	AI255428_169	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	262 bp upstream
Id2	inhibitor of DNA binding 2	106 bp upstream
Rr403250	regulatory region 403250	within coordinates
Rr463954	regulatory region 463954	within coordinates
Rr463955	regulatory region 463955	273 bp proximal
Rr463956	regulatory region 463956	932 bp proximal
Rr463957	regulatory region 463957	1945 bp proximal
Tssr112979	transcription start site region 112979	459 bp downstream
Tssr112980	transcription start site region 112980	239 bp upstream
Tssr112981	transcription start site region 112981	254 bp upstream
Tssr112982	transcription start site region 112982	1230 bp upstream
Tssr115883	transcription start site region 115883	1668 bp upstream
Tssr115884	transcription start site region 115884	405 bp upstream
Tssr115885	transcription start site region 115885	102 bp upstream
Tssr115886	transcription start site region 115886	1041 bp downstream