rs4229288 SNP Detail

Summary

• ID
  rs4229288
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

       CCGGG AGGGAGCCGC CACAGGGGGC TGAGCTGACT GCGCGGCACC AGGCTCGGTT
  CAGAATGAAG CGCGAGCCGG GCGGGGCGTC TTTTATGTGC ACTCGCCCTG GCCGCTCAAT
  CGGGCATCCC TGAATTGCCA TTGGTGGAAG GGCTCCCGTC CATCATACCA GGCGAATTCT
  S
  CCATTGGTGA GTATGAGCTC TCGGTTCTTC CGCGTTCGCA GCCAATGCCT GTAGGGTGGG
  AGGAGCGGGC GAGAGCCCAG CTGGGGTGGC AAATTGAGTA CAGTGTGCGC TGGGCGCCCA
  GGGGGCCTGA GTGTGCAATT GTGCCCGCCT TATTCCAATT CCCAGAGCTG GCAGGACCCC
  TGCCCCGGGG GTGTGCCCGG AGCTAGCTAT ACCCGCCCCC AGGACTTCCA GCAGCCCCAC
  TGTCTCCGCA CAGCAGACGG GAAG                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392305	AI255428_176	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229288					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392305	AI255428_176	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	255 bp upstream
Id2	inhibitor of DNA binding 2	113 bp upstream
Rr403250	regulatory region 403250	within coordinates
Tssr112979	transcription start site region 112979	466 bp downstream
Tssr112980	transcription start site region 112980	232 bp upstream
Tssr112981	transcription start site region 112981	247 bp upstream
Tssr112982	transcription start site region 112982	1223 bp upstream
Tssr115883	transcription start site region 115883	1675 bp upstream
Tssr115884	transcription start site region 115884	412 bp upstream
Tssr115885	transcription start site region 115885	109 bp upstream
Tssr115886	transcription start site region 115886	1034 bp downstream