rs4229289 SNP Detail

Summary

• ID
  rs4229289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTT CTTCCGCGTT CGCAGCCAAT
  R
  CCTGTAGGGT GGGAGGAGCG GGCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6392306	AI255428_223	TWGNF	TWGNF-Mouse	f	SNP	A			A		A			A	G						G					A																								G
ss16379932	12.019.544	TWGNF	TWGNF-Mouse-2	f	SNP		A	A	A	A	A	A	A	A	G	G	A	G	G	A	G	A	A	G	A	A	A	A	A	G	A	A	A	A	G	G	G	A	A	G	A	A	A	G	A	A	G	A	A	G	A	A	A	A
ss38886497	mCV22302957	ABI	CRAMUS_MOUSE	f	SNP		A	A	A						G											A
ss137401599	ENSMUSSNP4073348	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	A																	A
ss323938300	CHEV_12_25781117	CHEVERUD	SCREENING_POP	f	SNP																											A																	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4229289					SNP	A	A	A	A	A	A	A	A	A	G	G	A	G	G	A	G	A	A	G	A	A	A	A	A	G	A	A	A	A	G	G	G	A	A	G	A	A	A	G	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392306	AI255428_223	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	208 bp upstream
Id2	inhibitor of DNA binding 2	160 bp upstream
Rr403250	regulatory region 403250	within coordinates
Tssr112979	transcription start site region 112979	513 bp downstream
Tssr112980	transcription start site region 112980	185 bp upstream
Tssr112981	transcription start site region 112981	200 bp upstream
Tssr112982	transcription start site region 112982	1176 bp upstream
Tssr115883	transcription start site region 115883	1722 bp upstream
Tssr115884	transcription start site region 115884	459 bp upstream
Tssr115885	transcription start site region 115885	156 bp upstream
Tssr115886	transcription start site region 115886	987 bp downstream