rs4229290 SNP Detail

Summary

• ID
  rs4229290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCGGTT CAGAATGAAG
  CGCGAGCCGG GCGGGGCGTC TTTTATGTGC ACTCGCCCTG GCCGCTCAAT CGGGCATCCC
  TGAATTGCCA TTGGTGGAAG GGCTCCCGTC CATCATACCA GGCGAATTCT CCCATTGGTG
  AGTATGAGCT CTCGGTTCTT CCGCGTTCGC AGCCAATGCC TGTAGGGTGG GAGGAGCGGG
  Y
  GAGAGCCCAG CTGGGGTGGC AAATTGAGTA CAGTGTGCGC TGGGCGCCCA GGGGGCCTGA
  GTGTGCAATT GTGCCCGCCT TATTCCAATT CCCAGAGCTG GCAGGACCCC TGCCCCGGGG
  GTGTGCCCGG AGCTAGCTAT ACCCGCCCCC AGGACTTCCA GCAGCCCCAC TCTCTCCGCA
  CAGCAGACGG GAAGTCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392307	AI255428_246	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229290					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392307	AI255428_246	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	185 bp upstream
Id2	inhibitor of DNA binding 2	183 bp upstream
Rr403250	regulatory region 403250	within coordinates
Rr463954	regulatory region 463954	within coordinates
Rr463955	regulatory region 463955	196 bp proximal
Rr463956	regulatory region 463956	855 bp proximal
Rr463957	regulatory region 463957	1868 bp proximal
Tssr112979	transcription start site region 112979	536 bp downstream
Tssr112980	transcription start site region 112980	162 bp upstream
Tssr112981	transcription start site region 112981	177 bp upstream
Tssr112982	transcription start site region 112982	1153 bp upstream
Tssr115883	transcription start site region 115883	1745 bp upstream
Tssr115884	transcription start site region 115884	482 bp upstream
Tssr115885	transcription start site region 115885	179 bp upstream
Tssr115886	transcription start site region 115886	964 bp downstream