rs4229312 SNP Detail

Summary

• ID
  rs4229312
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32430457 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTCA ATTTTTATCA CAAGCCATGT
  K
  GTTCAAAACA CTTCAATTTT ATTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392329	AV375874_91	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229312					SNP	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392329	AV375874_91	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32430457 () rs orientation: reverse

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	within coordinates
Cpgi4541	CpG island 4541	483 bp distal
Rr403262	regulatory region 403262	1698 bp downstream
Rr464758	regulatory region 464758	1744 bp distal
Rr464759	regulatory region 464759	1090 bp distal
Rr464760	regulatory region 464760	899 bp distal
Rr464761	regulatory region 464761	788 bp distal
Rr464762	regulatory region 464762	654 bp proximal
Tssr113128	transcription start site region 113128	1751 bp downstream
Tssr113129	transcription start site region 113129	1644 bp downstream
Tssr113130	transcription start site region 113130	1563 bp downstream
Tssr113131	transcription start site region 113131	1529 bp downstream
Tssr113132	transcription start site region 113132	1357 bp downstream
Tssr113133	transcription start site region 113133	1280 bp downstream
Tssr113134	transcription start site region 113134	1224 bp downstream
Tssr113135	transcription start site region 113135	702 bp downstream
Tssr113136	transcription start site region 113136	518 bp downstream