rs4229577 SNP Detail

Summary

• ID
  rs4229577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110547569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGTGTC TCCTCCCTTT
  ACAACCCTGA CGCTGTCCCC ACGCTTGCTG TGCCAGCCGC CCGTGGTGGT TGGTTAGGTC
  TCTCAGAGAT GGCTCCTCGC TTTCCCGTTC TAGCTGCCTG CCGGGAAAGA GGCCAACTTT
  TGCGCTGGGG CCGTCCACAG TGTTTCTTTC CTTTGGTTAA TGGCACGGTC ACCATGTCCT
  R
  CTTACCTTAA TGTCTACCGA AAGCCATATT TCATAGTCTG TGGTAGAGGC CAGGGTTCCA
  CCTCAGCGCA AGGGAGGGTT CTGAGAAGTG CTTCCTCAGC CCACCTTGAG GAGAACCGCC
  ACGTTGGAAT GACGTGTTCA TGTTAGTTGC AGAATCAGTT TTTCACCTAC TTACACATGA
  TCCTTCAACA AGGCTCTCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392594	AW545884_24	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229577					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392594	AW545884_24	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110547569 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	within coordinates
Rr387783	regulatory region 387783	1931 bp upstream