rs4229579 SNP Detail

Summary

• ID
  rs4229579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110547648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTC CACCTCAGCG CAAGGGAGGG
  Y
  TCTGAGAAGT GCTTCCTCAG CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J	SPRET/EiJ
ss6392596	AW545884_103	TWGNF	TWGNF-Mouse	f	SNP	T		C	T	C	T	C	T				C
ss138691837	ENSMUSSNP2330825	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss324158332	CHEV_12_111819424	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J	SPRET/EiJ
rs4229579					SNP	T	T	C	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392596	AW545884_103	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110547648 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	within coordinates
Rr387783	regulatory region 387783	1852 bp upstream