rs4229580 SNP Detail

Summary

• ID
  rs4229580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110547685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCGGGA AAGAGGCCAA
  CTTTTGCGCT GGGGCCGTCC ACAGTGTTTC TTTCCTTTGG TTAATGGCAC GGTCACCATG
  TCCTGCTTAC CTTAATGTCT ACCGAAAGCC ATATTTCATA GTCTGTGGTA GAGGCCAGGG
  TTCCACCTCA GCGCAAGGGA GGGTTCTGAG AAGTGCTTCC TCAGCCCACC TTGAGGAGAA
  Y
  CGCCACGTTG GAATGACGTG TTCATGTTAG TTGCAGAATC AGTTTTTCAC CTACTTACAC
  ATGATCCTTC AACAAGGCTC TCGAGTGGAT AAAGATCACA GGATCTAAGA ATTCCACATT
  GGTAGAAAGT GACAGTAAAC TCAGCCCCTT GGCCTAGTGC AGCCTGCAGC TGCCTGTGGC
  CTGACTGCGG GCCGCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392597	AW545884_140	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229580					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392597	AW545884_140	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110547685 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	within coordinates
Rr387783	regulatory region 387783	1815 bp upstream