rs4229581 SNP Detail

Summary

• ID
  rs4229581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110547691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAGAGG CCAACTTTTG
  CGCTGGGGCC GTCCACAGTG TTTCTTTCCT TTGGTTAATG GCACGGTCAC CATGTCCTGC
  TTACCTTAAT GTCTACCGAA AGCCATATTT CATAGTCTGT GGTAGAGGCC AGGGTTCCAC
  CTCAGCGCAA GGGAGGGTTC TGAGAAGTGC TTCCTCAGCC CACCTTGAGG AGAACCGCCA
  Y
  GTTGGAATGA CGTGTTCATG TTAGTTGCAG AATCAGTTTT TCACCTACTT ACACATGATC
  CTTCAACAAG GCTCTCGAGT GGATAAAGAT CACAGGATCT AAGAATTCCA CATTGGTAGA
  AAGTGACAGT AAACTCAGCC CCTTGGCCTA GTGCAGCCTG CAGCTGCCTG TGGCCTGACT
  GCGGGCCGCA CTGTGTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6392598	AW545884_146	TWGNF	TWGNF-Mouse	f	SNP	C			C		C		C	C	C	C								T
ss47286360	NES11409673	PERLEGEN	MM_PANEL2	f	SNP		C		C	C	C	C	C		C	C	C	T	T		C	C	T		C
ss138691840	ENSMUSSNP4741689	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	C											T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4229581					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392598	AW545884_146	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss47286360	NES11409673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110547691 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	within coordinates
Rr387783	regulatory region 387783	1809 bp upstream