rs4229582 SNP Detail

Summary

• ID
  rs4229582
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110547714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCCGTC CACAGTGTTT
  CTTTCCTTTG GTTAATGGCA CGGTCACCAT GTCCTGCTTA CCTTAATGTC TACCGAAAGC
  CATATTTCAT AGTCTGTGGT AGAGGCCAGG GTTCCACCTC AGCGCAAGGG AGGGTTCTGA
  GAAGTGCTTC CTCAGCCCAC CTTGAGGAGA ACCGCCACGT TGGAATGACG TGTTCATGTT
  W
  GTTGCAGAAT CAGTTTTTCA CCTACTTACA CATGATCCTT CAACAAGGCT CTCGAGTGGA
  TAAAGATCAC AGGATCTAAG AATTCCACAT TGGTAGAAAG TGACAGTAAA CTCAGCCCCT
  TGGCCTAGTG CAGCCTGCAG CTGCCTGTGG CCTGACTGCG GGCCGCACTG TGTGGGCGCC
  CTCAGTGAGC CTTTCTTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6392599	AW545884_169	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4229582					SNP	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6392599	AW545884_169	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110547714 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	within coordinates
Rr387783	regulatory region 387783	1786 bp upstream