rs4230162 SNP Detail

Summary

• ID
  rs4230162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACTTAC TATATGTCCG
  CTGGCCTTCA CCCTGTGCCC ATAGTATTCA GGGGGCCCAA TGGCGCCTCA GCAGGTGTAG
  CTGCTCAGCA CTCGCAATGC TTTGCTGCAT GGTATGGGCA CTGCCCAGGT TTAAAAGTGG
  TCAGCCCCTG GAATTCCGAG GATGCAAAAG GACTTATTAA ATCGGCTATT CGTGATAATA
  R
  CCCAGTGGTA ATGCTAGAAA ATGAACTGAT GTATGGAGTT GCATTTGAAG TTCCTGCAGA
  AGCTCAGTCA AAAGATTTCC TGATTCCTAT TGGAAAAGCC AAAATTGAAA GGCAAGGGAC
  CCACATCACT GTAGTTGCCC ATTCAAGCCC AGTGGGCCAC TGCCTAGAAG CTGCAGCTGT
  ATTGTCTAAA GAGGGAATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6393182	C81408_52	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4230162					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393182	C81408_52	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841926 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1506 bp downstream
Rr407423	regulatory region 407423	1373 bp distal
Rr407424	regulatory region 407424	1627 bp distal
Tssr5799	transcription start site region 5799	581 bp downstream