rs4230164 SNP Detail

Summary

• ID
  rs4230164
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA TGTATGGAGT TGCATTTGAA
  S
  TTCCTGCAGA AGCTCAGTCA AAAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss6393184	C81408_102	TWGNF	TWGNF-Mouse	f	SNP	G		G		G	C	G	C	C						C
ss45170592	mCV24645170	ABI	CRAMUS_MOUSE	f	SNP		G	G				G		C
ss50908894	NES13484775	PERLEGEN	MM_PANEL2	f	SNP			G	G		C		C	C		G	G	C			C
ss148476153	ENSMUSSNP521421	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
ss319612291	CHEV_1_4761834	CHEVERUD	SCREENING_POP	f	SNP										C				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs4230164					SNP	G	G	G	G	G	C	G	C	C	C	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393184	C81408_102	TWGNF	TWGNF-Mouse-2	f	SNP	C/G
ss50908894	NES13484775	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841976 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1456 bp downstream
Rr407423	regulatory region 407423	1423 bp distal
Rr407424	regulatory region 407424	1677 bp distal
Tssr5799	transcription start site region 5799	631 bp downstream